J4_6NTA_015

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6NTA|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NTA_015 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.2353

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6NTA|1|XA|G|142
6NTA|1|XA|A|143
6NTA|1|XA|G|144
*
6NTA|1|XA|C|178
6NTA|1|XA|A|179
6NTA|1|XA|U|180
6NTA|1|XA|G|181
6NTA|1|XA|U|182
6NTA|1|XA|G|183
*
6NTA|1|XA|C|194
6NTA|1|XA|A|195
6NTA|1|XA|A|196
6NTA|1|XA|A|197
6NTA|1|XA|G|198
*
6NTA|1|XA|C|219
6NTA|1|XA|G|220
6NTA|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20