J4_6NUO_001

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6NUO|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NUO_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0764

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6NUO|1|QA|G|115
6NUO|1|QA|A|116
6NUO|1|QA|G|117
6NUO|1|QA|U|118
6NUO|1|QA|A|119
6NUO|1|QA|A|120
6NUO|1|QA|C|121
6NUO|1|QA|G|122
*
6NUO|1|QA|U|239
6NUO|1|QA|C|240
*
6NUO|1|QA|G|286
6NUO|1|QA|U|287
6NUO|1|QA|A|288
6NUO|1|QA|G|289
*
6NUO|1|QA|C|311
6NUO|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17