J4_6NUO_012

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6NUO|1|RA|A|1993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NUO_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.092

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6NUO|1|RA|U|1864
6NUO|1|RA|U|1865
6NUO|1|RA|G|1866
*
6NUO|1|RA|C|1927
6NUO|1|RA|G|1928
*
6NUO|1|RA|C|1946
6NUO|1|RA|C|1947
6NUO|1|RA|U|1948
6NUO|1|RA|A|1949
6NUO|1|RA|A|1950
6NUO|1|RA|G|1951
6NUO|1|RA|G|1952
6NUO|1|RA|U|1953
6NUO|1|RA|A|1954
6NUO|1|RA|G|1955
*
6NUO|1|RA|C|1989
6NUO|1|RA|G|1990
6NUO|1|RA|A|1991
6NUO|1|RA|A|1992
6NUO|1|RA|A|1993
6NUO|1|RA|A|1994

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QV

Transfer RNA; tRNA

Chain RD

50S ribosomal protein L2