3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGUUC*GGUUAG*CU*ACCCGUAC
Length
21 nucleotides
Bulged bases
6NUO|1|YA|U|1387
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6NUO_022 not in the Motif Atlas
Homologous match to J4_9DFE_004
Geometric discrepancy: 0.0764
The information below is about J4_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6NUO|1|YA|G|1356
6NUO|1|YA|G|1357
6NUO|1|YA|U|1358
6NUO|1|YA|U|1359
6NUO|1|YA|C|1360
*
6NUO|1|YA|G|1384
6NUO|1|YA|G|1385
6NUO|1|YA|U|1386
6NUO|1|YA|U|1387
6NUO|1|YA|A|1388
6NUO|1|YA|G|1389
*
6NUO|1|YA|C|1450
6NUO|1|YA|U|1451
*
6NUO|1|YA|A|1643
6NUO|1|YA|C|1644
6NUO|1|YA|C|1645
6NUO|1|YA|C|1646
6NUO|1|YA|G|1647
6NUO|1|YA|U|1648
6NUO|1|YA|A|1649
6NUO|1|YA|C|1650

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YX
50S ribosomal protein L23

Coloring options:


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