3D structure

PDB id
6NWY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UC*GGUUAG*CU*ACCCGUA
Length
17 nucleotides
Bulged bases
6NWY|1|RA|U|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6NWY_009 not in the Motif Atlas
Homologous match to J4_9DFE_005
Geometric discrepancy: 0.1103
The information below is about J4_9DFE_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_10313.5
Basepair signature
cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6NWY|1|RA|U|1313
6NWY|1|RA|C|1314
*
6NWY|1|RA|G|1338
6NWY|1|RA|G|1339
6NWY|1|RA|U|1340
6NWY|1|RA|U|1341
6NWY|1|RA|A|1342
6NWY|1|RA|G|1343
*
6NWY|1|RA|C|1404
6NWY|1|RA|U|1405
*
6NWY|1|RA|A|1597
6NWY|1|RA|C|1598
6NWY|1|RA|C|1599
6NWY|1|RA|C|1600
6NWY|1|RA|G|1601
6NWY|1|RA|U|1602
6NWY|1|RA|A|1603

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34
Chain RX
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3215 s