J4_6O3M_002

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6O3M|1|QA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O3M_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.126

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6O3M|1|QA|G|142
6O3M|1|QA|A|143
6O3M|1|QA|G|144
*
6O3M|1|QA|C|178
6O3M|1|QA|A|179
6O3M|1|QA|U|180
6O3M|1|QA|G|181
6O3M|1|QA|U|182
6O3M|1|QA|G|183
*
6O3M|1|QA|C|194
6O3M|1|QA|A|195
6O3M|1|QA|A|196
6O3M|1|QA|A|197
6O3M|1|QA|G|198
*
6O3M|1|QA|C|219
6O3M|1|QA|G|220
6O3M|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20