3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
CAAAG*CUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
6O3M|1|YA|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6O3M_026 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.197
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6O3M|1|YA|C|2285
6O3M|1|YA|A|2286
6O3M|1|YA|A|2287
6O3M|1|YA|A|2288
6O3M|1|YA|G|2289
*
6O3M|1|YA|C|2343
6O3M|1|YA|U|2344
6O3M|1|YA|G|2345
6O3M|1|YA|A|2346
6O3M|1|YA|C|2347
*
6O3M|1|YA|G|2370
6O3M|1|YA|G|2371
6O3M|1|YA|G|2372
*
6O3M|1|YA|C|2381
6O3M|1|YA|G|2382
6O3M|1|YA|G|2383

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain Y6
50S ribosomal protein L33
Chain Y8
50S ribosomal protein L35
Chain YS
50S ribosomal protein L18

Coloring options:


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