J4_6O8W_005

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

6O8W|1|A|U|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8W_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1287

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6O8W|1|A|G|1346
6O8W|1|A|U|1347
6O8W|1|A|U|1348
6O8W|1|A|U|1349
6O8W|1|A|C|1350
*
6O8W|1|A|G|1374
6O8W|1|A|G|1375
6O8W|1|A|U|1376
6O8W|1|A|U|1377
6O8W|1|A|A|1378
6O8W|1|A|G|1379
*
6O8W|1|A|C|1440
6O8W|1|A|C|1441
*
6O8W|1|A|G|1640
6O8W|1|A|C|1641
6O8W|1|A|C|1642
6O8W|1|A|C|1643
6O8W|1|A|G|1644
6O8W|1|A|U|1645
6O8W|1|A|A|1646
6O8W|1|A|C|1647

Current chains

Chain A

50S subunit

Nearby chains

Chain 4

50S ribosomal protein L34

Chain U

50S ribosomal protein L23