J4_6O8X_001

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

6O8X|1|A|C|445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8X_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1751

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6O8X|1|A|C|271
6O8X|1|A|C|272
*
6O8X|1|A|G|410
6O8X|1|A|A|411
6O8X|1|A|G|412
6O8X|1|A|U|413
6O8X|1|A|A|414
6O8X|1|A|C|415
*
6O8X|1|A|G|439
6O8X|1|A|G|440
6O8X|1|A|A|441
6O8X|1|A|A|442
6O8X|1|A|U|443
6O8X|1|A|C|444
6O8X|1|A|C|445
6O8X|1|A|G|446
*
6O8X|1|A|C|461
6O8X|1|A|A|462
6O8X|1|A|A|463
6O8X|1|A|G|464

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L28