J4_6O8X_005

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

6O8X|1|A|U|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8X_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1337

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6O8X|1|A|G|1346
6O8X|1|A|U|1347
6O8X|1|A|U|1348
6O8X|1|A|U|1349
6O8X|1|A|C|1350
*
6O8X|1|A|G|1374
6O8X|1|A|G|1375
6O8X|1|A|U|1376
6O8X|1|A|U|1377
6O8X|1|A|A|1378
6O8X|1|A|G|1379
*
6O8X|1|A|C|1440
6O8X|1|A|C|1441
*
6O8X|1|A|G|1640
6O8X|1|A|C|1641
6O8X|1|A|C|1642
6O8X|1|A|C|1643
6O8X|1|A|G|1644
6O8X|1|A|U|1645
6O8X|1|A|A|1646
6O8X|1|A|C|1647

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain U

50S ribosomal protein L23