J4_6O8X_010

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

6O8X|1|A|A|2300, 6O8X|1|A|A|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8X_010 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.156

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

6O8X|1|A|C|2299
6O8X|1|A|A|2300
6O8X|1|A|A|2301
6O8X|1|A|A|2302
6O8X|1|A|G|2303
*
6O8X|1|A|U|2357
6O8X|1|A|U|2358
6O8X|1|A|G|2359
6O8X|1|A|A|2360
6O8X|1|A|C|2361
*
6O8X|1|A|G|2384
6O8X|1|A|G|2385
6O8X|1|A|G|2386
*
6O8X|1|A|C|2395
6O8X|1|A|G|2396
6O8X|1|A|G|2397

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L33

Chain 5

50S ribosomal protein L35

Chain X

50S ribosomal protein L27