3D structure

PDB id
6O9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Elongation Competent Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
6O9J|1|B|G|2286, 6O9J|1|B|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6O9J_010 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.2513
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6O9J|1|B|C|2285
6O9J|1|B|G|2286
6O9J|1|B|A|2287
6O9J|1|B|A|2288
6O9J|1|B|G|2289
*
6O9J|1|B|U|2343
6O9J|1|B|U|2344
6O9J|1|B|G|2345
6O9J|1|B|A|2346
6O9J|1|B|C|2347
*
6O9J|1|B|G|2370
6O9J|1|B|G|2371
6O9J|1|B|U|2372
*
6O9J|1|B|A|2381
6O9J|1|B|G|2382
6O9J|1|B|G|2383

Current chains

Chain B
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L33
Chain 4
50S ribosomal protein L35
Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27

Coloring options:


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