J4_6OF6_017

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6OF6|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OF6_017 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1387

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6OF6|1|XA|G|142
6OF6|1|XA|A|143
6OF6|1|XA|G|144
*
6OF6|1|XA|C|178
6OF6|1|XA|A|179
6OF6|1|XA|U|180
6OF6|1|XA|G|181
6OF6|1|XA|U|182
6OF6|1|XA|G|183
*
6OF6|1|XA|C|194
6OF6|1|XA|A|195
6OF6|1|XA|A|196
6OF6|1|XA|A|197
6OF6|1|XA|G|198
*
6OF6|1|XA|C|219
6OF6|1|XA|G|220
6OF6|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20