3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
6OF6|1|XA|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OF6_017 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.1387
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

6OF6|1|XA|G|142
6OF6|1|XA|A|143
6OF6|1|XA|G|144
*
6OF6|1|XA|C|178
6OF6|1|XA|A|179
6OF6|1|XA|U|180
6OF6|1|XA|G|181
6OF6|1|XA|U|182
6OF6|1|XA|G|183
*
6OF6|1|XA|C|194
6OF6|1|XA|A|195
6OF6|1|XA|A|196
6OF6|1|XA|A|197
6OF6|1|XA|G|198
*
6OF6|1|XA|C|219
6OF6|1|XA|G|220
6OF6|1|XA|C|221

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XT
30S ribosomal protein S20

Coloring options:


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