J4_6OGF_007

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OGF_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6OGF|1|1|A|1772
6OGF|1|1|A|1773
6OGF|1|1|C|1774
6OGF|1|1|U|1775
6OGF|1|1|G|1776
*
6OGF|1|1|C|1788
6OGF|1|1|A|1789
6OGF|1|1|C|1790
6OGF|1|1|A|1791
6OGF|1|1|G|1792
*
6OGF|1|1|U|1827
6OGF|1|1|G|1828
6OGF|1|1|A|1829
6OGF|1|1|C|1830
*
6OGF|1|1|G|1975
6OGF|1|1|U|1976
6OGF|1|1|A|1977
6OGF|1|1|A|1978
6OGF|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2