3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
6OGG|1|1|G|1271, 6OGG|1|1|A|1272, 6OGG|1|1|U|1273, 6OGG|1|1|A|1274, 6OGG|1|1|A|1275, 6OGG|1|1|C|1646, 6OGG|1|1|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OGG_003 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.2043
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

6OGG|1|1|C|1270
6OGG|1|1|G|1271
6OGG|1|1|A|1272
6OGG|1|1|U|1273
6OGG|1|1|A|1274
6OGG|1|1|A|1275
6OGG|1|1|A|1276
*
6OGG|1|1|U|1294
6OGG|1|1|C|1295
*
6OGG|1|1|G|1645
6OGG|1|1|C|1646
6OGG|1|1|U|1647
6OGG|1|1|U|1648
*
6OGG|1|1|A|2009
6OGG|1|1|G|2010

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain n
50S ribosomal protein L17
Chain s
50S ribosomal protein L22

Coloring options:


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