J4_6OGG_007

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OGG_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.1657

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6OGG|1|1|A|1772
6OGG|1|1|A|1773
6OGG|1|1|C|1774
6OGG|1|1|U|1775
6OGG|1|1|G|1776
*
6OGG|1|1|C|1788
6OGG|1|1|A|1789
6OGG|1|1|C|1790
6OGG|1|1|A|1791
6OGG|1|1|G|1792
*
6OGG|1|1|U|1827
6OGG|1|1|G|1828
6OGG|1|1|A|1829
6OGG|1|1|C|1830
*
6OGG|1|1|G|1975
6OGG|1|1|U|1976
6OGG|1|1|A|1977
6OGG|1|1|A|1978
6OGG|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2