J4_6OGI_001

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6OGI|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OGI_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1797

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OGI|1|1|C|268
6OGI|1|1|C|269
*
6OGI|1|1|G|370
6OGI|1|1|A|371
6OGI|1|1|G|372
6OGI|1|1|U|373
6OGI|1|1|A|374
6OGI|1|1|G|375
*
6OGI|1|1|U|399
6OGI|1|1|G|400
6OGI|1|1|A|401
6OGI|1|1|A|402
6OGI|1|1|U|403
6OGI|1|1|A|404
6OGI|1|1|U|405
6OGI|1|1|G|406
*
6OGI|1|1|C|421
6OGI|1|1|A|422
6OGI|1|1|A|423
6OGI|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28