J4_6OIG_001
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 6OIG|1|5|U|298
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OIG_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.2065
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6OIG|1|5|U|112
6OIG|1|5|C|113
*
6OIG|1|5|G|267
6OIG|1|5|A|268
6OIG|1|5|G|269
6OIG|1|5|U|270
6OIG|1|5|C|271
6OIG|1|5|G|272
*
6OIG|1|5|C|293
6OIG|1|5|U|294
6OIG|1|5|A|295
6OIG|1|5|A|296
6OIG|1|5|G|297
6OIG|1|5|U|298
6OIG|1|5|G|299
*
6OIG|1|5|U|316
6OIG|1|5|A|317
6OIG|1|5|A|318
6OIG|1|5|A|319
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
Coloring options: