J4_6OIG_006

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OIG_006 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.1642

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|G|2130
6OIG|1|5|A|2131
6OIG|1|5|C|2132
6OIG|1|5|U|2133
6OIG|1|5|G|2134
*
6OIG|1|5|C|2146
6OIG|1|5|A|2147
6OIG|1|5|U|2148
6OIG|1|5|A|2149
6OIG|1|5|G|2150
*
6OIG|1|5|U|2186
6OIG|1|5|G|2187
6OIG|1|5|A|2188
6OIG|1|5|U|2189
6OIG|1|5|U|2190
*
6OIG|1|5|A|2317
6OIG|1|5|U|2318
6OIG|1|5|U|2319
6OIG|1|5|A|2320
6OIG|1|5|A|2321
6OIG|1|5|C|2322

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L43-A