J4_6OJ2_002

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OJ2_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1123

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6OJ2|1|QA|G|142
6OJ2|1|QA|A|143
6OJ2|1|QA|G|144
*
6OJ2|1|QA|C|178
6OJ2|1|QA|A|179
6OJ2|1|QA|U|180
6OJ2|1|QA|G|181
6OJ2|1|QA|U|182
6OJ2|1|QA|G|183
*
6OJ2|1|QA|C|194
6OJ2|1|QA|A|195
6OJ2|1|QA|A|196
6OJ2|1|QA|A|197
6OJ2|1|QA|G|198
*
6OJ2|1|QA|C|219
6OJ2|1|QA|G|220
6OJ2|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20