J4_6OLE_005

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6OLE|1|t|A|2345, 6OLE|1|t|U|2348, 6OLE|1|t|U|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLE|1|t|C|2344
6OLE|1|t|A|2345
6OLE|1|t|A|2346
6OLE|1|t|A|2347
6OLE|1|t|U|2348
6OLE|1|t|A|2349
6OLE|1|t|U|2350
*
6OLE|1|t|A|2368
6OLE|1|t|G|2369
6OLE|1|t|G|2370
*
6OLE|1|t|C|2803
6OLE|1|t|A|2804
6OLE|1|t|U|2805
6OLE|1|t|G|2806
6OLE|1|t|U|2807
6OLE|1|t|U|2808
*
6OLE|1|t|A|3827
6OLE|1|t|G|3828

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L17

Chain S

60S ribosomal protein L19

Chain e

60S ribosomal protein L31