J4_6OLE_010
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6OLE|1|t|U|3789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OLE_010 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1471
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6OLE|1|t|C|3667
6OLE|1|t|U|3668
6OLE|1|t|G|3669
*
6OLE|1|t|C|3723
6OLE|1|t|G|3724
*
6OLE|1|t|C|3742
6OLE|1|t|U|3743
6OLE|1|t|U|3744
6OLE|1|t|A|3745
6OLE|1|t|A|3746
6OLE|1|t|G|3747
6OLE|1|t|G|3748
6OLE|1|t|U|3749
6OLE|1|t|A|3750
6OLE|1|t|G|3751
*
6OLE|1|t|U|3785
6OLE|1|t|G|3786
6OLE|1|t|A|3787
6OLE|1|t|A|3788
6OLE|1|t|U|3789
6OLE|1|t|G|3790
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain o
- 60S ribosomal protein L41
- Chain v
- Transfer RNA; tRNA
Coloring options: