J4_6OLF_015
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAG*CAG*CGUGUCCUU*AGUC
- Length
- 20 nucleotides
- Bulged bases
- 6OLF|1|v|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OLF_015 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.354
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6OLF|1|v|G|7
6OLF|1|v|U|8
6OLF|1|v|A|9
6OLF|1|v|G|10
*
6OLF|1|v|C|25
6OLF|1|v|A|26
6OLF|1|v|G|27
*
6OLF|1|v|C|43
6OLF|1|v|G|44
6OLF|1|v|U|45
6OLF|1|v|G|46
6OLF|1|v|U|47
6OLF|1|v|C|48
6OLF|1|v|C|49
6OLF|1|v|U|50
6OLF|1|v|U|51
*
6OLF|1|v|A|64
6OLF|1|v|G|65
6OLF|1|v|U|66
6OLF|1|v|C|67
Current chains
- Chain v
- AA tRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain p
- 60S ribosomal protein L36a
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: