J4_6OLG_011
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6OLG|1|B1|A|672, 6OLG|1|B1|A|1083, 6OLG|1|B1|C|1085, 6OLG|1|B1|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OLG_011 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1121
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
6OLG|1|B1|A|671
6OLG|1|B1|A|672
6OLG|1|B1|G|673
*
6OLG|1|B1|C|1032
6OLG|1|B1|G|1033
6OLG|1|B1|A|1034
6OLG|1|B1|A|1035
6OLG|1|B1|A|1036
6OLG|1|B1|G|1037
*
6OLG|1|B1|C|1078
6OLG|1|B1|C|1079
6OLG|1|B1|A|1080
6OLG|1|B1|U|1081
6OLG|1|B1|A|1082
6OLG|1|B1|A|1083
6OLG|1|B1|A|1084
6OLG|1|B1|C|1085
6OLG|1|B1|G|1086
6OLG|1|B1|A|1087
6OLG|1|B1|U|1088
6OLG|1|B1|G|1089
*
6OLG|1|B1|U|1160
6OLG|1|B1|U|1161
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41
- Chain Ap
- 60S ribosomal protein L37a
- Chain BL
- 40S ribosomal protein S11
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14
- Chain BW
- 40S ribosomal protein S15a
- Chain BX
- 40S ribosomal protein S23
- Chain Ba
- 40S ribosomal protein S26
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