J4_6OPE_017

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6OPE|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OPE_017 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1487

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6OPE|1|XA|G|142
6OPE|1|XA|A|143
6OPE|1|XA|G|144
*
6OPE|1|XA|C|178
6OPE|1|XA|A|179
6OPE|1|XA|U|180
6OPE|1|XA|G|181
6OPE|1|XA|U|182
6OPE|1|XA|G|183
*
6OPE|1|XA|C|194
6OPE|1|XA|A|195
6OPE|1|XA|A|196
6OPE|1|XA|A|197
6OPE|1|XA|G|198
*
6OPE|1|XA|C|219
6OPE|1|XA|G|220
6OPE|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20