J4_6ORD_017

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6ORD|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORD_017 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0974

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6ORD|1|XA|G|142
6ORD|1|XA|A|143
6ORD|1|XA|G|144
*
6ORD|1|XA|C|178
6ORD|1|XA|A|179
6ORD|1|XA|U|180
6ORD|1|XA|G|181
6ORD|1|XA|U|182
6ORD|1|XA|G|183
*
6ORD|1|XA|C|194
6ORD|1|XA|A|195
6ORD|1|XA|A|196
6ORD|1|XA|A|197
6ORD|1|XA|G|198
*
6ORD|1|XA|C|219
6ORD|1|XA|G|220
6ORD|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20