3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAAAG*CUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
6ORD|1|YA|A|2288, 6ORD|1|YA|G|2382
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ORD_029 not in the Motif Atlas
Homologous match to J4_9DFE_009
Geometric discrepancy: 0.0903
The information below is about J4_9DFE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6ORD|1|YA|C|2285
6ORD|1|YA|A|2286
6ORD|1|YA|A|2287
6ORD|1|YA|A|2288
6ORD|1|YA|G|2289
*
6ORD|1|YA|C|2343
6ORD|1|YA|U|2344
6ORD|1|YA|G|2345
6ORD|1|YA|A|2346
6ORD|1|YA|C|2347
*
6ORD|1|YA|G|2370
6ORD|1|YA|G|2371
6ORD|1|YA|G|2372
*
6ORD|1|YA|C|2381
6ORD|1|YA|G|2382
6ORD|1|YA|G|2383

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain Y6
50S ribosomal protein L33
Chain Y8
50S ribosomal protein L35
Chain YG
50S ribosomal protein L5
Chain YS
50S ribosomal protein L18

Coloring options:


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