J4_6OST_001

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6OST|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OST_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1818

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OST|1|1|C|268
6OST|1|1|C|269
*
6OST|1|1|G|370
6OST|1|1|A|371
6OST|1|1|G|372
6OST|1|1|U|373
6OST|1|1|A|374
6OST|1|1|G|375
*
6OST|1|1|U|399
6OST|1|1|G|400
6OST|1|1|A|401
6OST|1|1|A|402
6OST|1|1|U|403
6OST|1|1|A|404
6OST|1|1|U|405
6OST|1|1|G|406
*
6OST|1|1|C|421
6OST|1|1|A|422
6OST|1|1|A|423
6OST|1|1|G|424

Current chains

Chain 1

23S Ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28