J4_6OST_012

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6OST|1|2|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OST_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2489

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OST|1|2|G|115
6OST|1|2|A|116
6OST|1|2|G|117
6OST|1|2|U|118
6OST|1|2|A|119
6OST|1|2|A|120
6OST|1|2|U|121
6OST|1|2|G|122
*
6OST|1|2|U|239
6OST|1|2|G|240
*
6OST|1|2|C|286
6OST|1|2|U|287
6OST|1|2|A|288
6OST|1|2|G|289
*
6OST|1|2|C|311
6OST|1|2|C|312

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17