J4_6OTR_009

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6OTR|1|RA|U|1341, 6OTR|1|RA|A|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OTR_009 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1168

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6OTR|1|RA|G|1310
6OTR|1|RA|G|1311
6OTR|1|RA|U|1312
6OTR|1|RA|U|1313
6OTR|1|RA|C|1314
*
6OTR|1|RA|G|1338
6OTR|1|RA|G|1339
6OTR|1|RA|U|1340
6OTR|1|RA|U|1341
6OTR|1|RA|A|1342
6OTR|1|RA|G|1343
*
6OTR|1|RA|C|1404
6OTR|1|RA|U|1405
*
6OTR|1|RA|A|1597
6OTR|1|RA|C|1598
6OTR|1|RA|C|1599
6OTR|1|RA|C|1600
6OTR|1|RA|G|1601
6OTR|1|RA|U|1602
6OTR|1|RA|A|1603
6OTR|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23