J4_6OTR_012

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OTR_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0534

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6OTR|1|RA|G|1772
6OTR|1|RA|A|1773
6OTR|1|RA|C|1774
6OTR|1|RA|U|1775
6OTR|1|RA|G|1776
*
6OTR|1|RA|C|1788
6OTR|1|RA|A|1789
6OTR|1|RA|C|1790
6OTR|1|RA|A|1791
6OTR|1|RA|G|1792
*
6OTR|1|RA|C|1827
6OTR|1|RA|G|1828
6OTR|1|RA|A|1829
6OTR|1|RA|C|1830
*
6OTR|1|RA|G|1975
6OTR|1|RA|U|1976
6OTR|1|RA|A|1977
6OTR|1|RA|A|1978
6OTR|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2