J4_6OTR_029
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 6OTR|1|YA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OTR_029 not in the Motif Atlas
- Homologous match to J4_4WF9_008
- Geometric discrepancy: 0.1586
- The information below is about J4_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6OTR|1|YA|C|2285
6OTR|1|YA|A|2286
6OTR|1|YA|A|2287
6OTR|1|YA|A|2288
6OTR|1|YA|G|2289
*
6OTR|1|YA|C|2343
6OTR|1|YA|U|2344
6OTR|1|YA|G|2345
6OTR|1|YA|A|2346
6OTR|1|YA|C|2347
*
6OTR|1|YA|G|2370
6OTR|1|YA|G|2371
6OTR|1|YA|G|2372
*
6OTR|1|YA|C|2381
6OTR|1|YA|G|2382
6OTR|1|YA|G|2383
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y0
- 50S ribosomal protein L27
- Chain Y6
- 50S ribosomal protein L33
- Chain Y8
- 50S ribosomal protein L35
- Chain YG
- 50S ribosomal protein L5
- Chain YS
- 50S ribosomal protein L18
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