J4_6OXA_002

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OXA_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1162

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6OXA|1|QA|G|142
6OXA|1|QA|A|143
6OXA|1|QA|G|144
*
6OXA|1|QA|C|178
6OXA|1|QA|A|179
6OXA|1|QA|U|180
6OXA|1|QA|G|181
6OXA|1|QA|U|182
6OXA|1|QA|G|183
*
6OXA|1|QA|C|194
6OXA|1|QA|A|195
6OXA|1|QA|A|196
6OXA|1|QA|A|197
6OXA|1|QA|G|198
*
6OXA|1|QA|C|219
6OXA|1|QA|G|220
6OXA|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20