J4_6OXA_003
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6OXA|1|QA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OXA_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0711
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6OXA|1|QA|G|575
6OXA|1|QA|G|576
6OXA|1|QA|G|577
*
6OXA|1|QA|C|764
6OXA|1|QA|G|765
6OXA|1|QA|A|766
6OXA|1|QA|A|767
6OXA|1|QA|A|768
6OXA|1|QA|G|769
*
6OXA|1|QA|C|810
6OXA|1|QA|C|811
6OXA|1|QA|C|812
6OXA|1|QA|U|813
6OXA|1|QA|A|814
6OXA|1|QA|A|815
6OXA|1|QA|A|816
6OXA|1|QA|C|817
6OXA|1|QA|G|818
6OXA|1|QA|A|819
6OXA|1|QA|U|820
6OXA|1|QA|G|821
*
6OXA|1|QA|C|879
6OXA|1|QA|C|880
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QH
- 30S ribosomal protein S8
- Chain QL
- 30S ribosomal protein S12
- Chain QO
- 30S ribosomal protein S15
- Chain QQ
- 30S ribosomal protein S17
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
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