J4_6OXI_005

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6OXI|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OXI_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1506

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6OXI|1|RA|C|268
6OXI|1|RA|U|269
*
6OXI|1|RA|G|370
6OXI|1|RA|A|371
6OXI|1|RA|G|372
6OXI|1|RA|U|373
6OXI|1|RA|A|374
6OXI|1|RA|C|375
*
6OXI|1|RA|G|399
6OXI|1|RA|G|400
6OXI|1|RA|A|401
6OXI|1|RA|A|402
6OXI|1|RA|U|403
6OXI|1|RA|C|404
6OXI|1|RA|U|405
6OXI|1|RA|G|406
*
6OXI|1|RA|U|421
6OXI|1|RA|A|422
6OXI|1|RA|A|423
6OXI|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9