J4_6OXI_016

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OXI_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1382

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6OXI|1|XA|G|142
6OXI|1|XA|A|143
6OXI|1|XA|G|144
*
6OXI|1|XA|C|178
6OXI|1|XA|A|179
6OXI|1|XA|U|180
6OXI|1|XA|G|181
6OXI|1|XA|U|182
6OXI|1|XA|G|183
*
6OXI|1|XA|C|194
6OXI|1|XA|A|195
6OXI|1|XA|A|196
6OXI|1|XA|A|197
6OXI|1|XA|G|198
*
6OXI|1|XA|C|219
6OXI|1|XA|G|220
6OXI|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20