J4_6P5J_005
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 6P5J|1|5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6P5J_005 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1225
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6P5J|1|5|C|111
6P5J|1|5|C|112
*
6P5J|1|5|G|278
6P5J|1|5|A|279
6P5J|1|5|G|280
6P5J|1|5|U|281
6P5J|1|5|C|282
6P5J|1|5|G|283
*
6P5J|1|5|C|304
6P5J|1|5|A|305
6P5J|1|5|A|306
6P5J|1|5|A|307
6P5J|1|5|G|308
6P5J|1|5|C|309
6P5J|1|5|G|310
*
6P5J|1|5|U|327
6P5J|1|5|A|328
6P5J|1|5|A|329
6P5J|1|5|G|330
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AL
- eL13
- Chain AN
- eL15
- Chain Ah
- eL35
- Chain Ai
- eL36
Coloring options: