J4_6PC5_010

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

6PC5|1|I|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC5_010 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1207

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

6PC5|1|I|C|2285
6PC5|1|I|G|2286
6PC5|1|I|A|2287
6PC5|1|I|A|2288
6PC5|1|I|G|2289
*
6PC5|1|I|U|2343
6PC5|1|I|U|2344
6PC5|1|I|G|2345
6PC5|1|I|A|2346
6PC5|1|I|C|2347
*
6PC5|1|I|G|2370
6PC5|1|I|G|2371
6PC5|1|I|U|2372
*
6PC5|1|I|A|2381
6PC5|1|I|G|2382
6PC5|1|I|G|2383

Current chains

Chain I

23S ribosomal RNA

Nearby chains