J4_6PC8_010

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

6PC8|1|I|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PC8_010 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.15

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

6PC8|1|I|C|2285
6PC8|1|I|G|2286
6PC8|1|I|A|2287
6PC8|1|I|A|2288
6PC8|1|I|G|2289
*
6PC8|1|I|U|2343
6PC8|1|I|U|2344
6PC8|1|I|G|2345
6PC8|1|I|A|2346
6PC8|1|I|C|2347
*
6PC8|1|I|G|2370
6PC8|1|I|G|2371
6PC8|1|I|U|2372
*
6PC8|1|I|A|2381
6PC8|1|I|G|2382
6PC8|1|I|G|2383

Current chains

Chain I

23S ribosomal RNA

Nearby chains