J4_6PCH_008

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCH_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0922

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6PCH|1|I|A|1772
6PCH|1|I|A|1773
6PCH|1|I|C|1774
6PCH|1|I|U|1775
6PCH|1|I|G|1776
*
6PCH|1|I|C|1788
6PCH|1|I|A|1789
6PCH|1|I|C|1790
6PCH|1|I|A|1791
6PCH|1|I|G|1792
*
6PCH|1|I|U|1827
6PCH|1|I|G|1828
6PCH|1|I|A|1829
6PCH|1|I|C|1830
*
6PCH|1|I|G|1975
6PCH|1|I|U|1976
6PCH|1|I|A|1977
6PCH|1|I|A|1978
6PCH|1|I|U|1979

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2