J4_6PCR_010

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

6PCR|1|I|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCR_010 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1289

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

6PCR|1|I|C|2285
6PCR|1|I|G|2286
6PCR|1|I|A|2287
6PCR|1|I|A|2288
6PCR|1|I|G|2289
*
6PCR|1|I|U|2343
6PCR|1|I|U|2344
6PCR|1|I|G|2345
6PCR|1|I|A|2346
6PCR|1|I|C|2347
*
6PCR|1|I|G|2370
6PCR|1|I|G|2371
6PCR|1|I|U|2372
*
6PCR|1|I|A|2381
6PCR|1|I|G|2382
6PCR|1|I|G|2383

Current chains

Chain I

23S ribosomal RNA

Nearby chains