J4_6PCS_010

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

6PCS|1|I|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PCS_010 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.133

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

6PCS|1|I|C|2285
6PCS|1|I|G|2286
6PCS|1|I|A|2287
6PCS|1|I|A|2288
6PCS|1|I|G|2289
*
6PCS|1|I|U|2343
6PCS|1|I|U|2344
6PCS|1|I|G|2345
6PCS|1|I|A|2346
6PCS|1|I|C|2347
*
6PCS|1|I|G|2370
6PCS|1|I|G|2371
6PCS|1|I|U|2372
*
6PCS|1|I|A|2381
6PCS|1|I|G|2382
6PCS|1|I|G|2383

Current chains

Chain I

23S ribosomal RNA

Nearby chains