3D structure

PDB id
6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cryo-EM structure of E.coli 50S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
6PJ6|1|I|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6PJ6_009 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.0691
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6PJ6|1|I|C|2285
6PJ6|1|I|G|2286
6PJ6|1|I|A|2287
6PJ6|1|I|A|2288
6PJ6|1|I|G|2289
*
6PJ6|1|I|U|2343
6PJ6|1|I|U|2344
6PJ6|1|I|G|2345
6PJ6|1|I|A|2346
6PJ6|1|I|C|2347
*
6PJ6|1|I|G|2370
6PJ6|1|I|G|2371
6PJ6|1|I|U|2372
*
6PJ6|1|I|A|2381
6PJ6|1|I|G|2382
6PJ6|1|I|G|2383

Current chains

Chain I
23S rRNA

Nearby chains

Chain W
50S ribosomal protein L18
Chain e
50S ribosomal protein L27
Chain j
50S ribosomal protein L33
Chain l
50S ribosomal protein L35

Coloring options:


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