J4_6PPF_007

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

6PPF|1|A|A|2317

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PPF_007 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.2515

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

6PPF|1|A|C|2314
6PPF|1|A|A|2315
6PPF|1|A|A|2316
6PPF|1|A|A|2317
6PPF|1|A|G|2318
*
6PPF|1|A|U|2372
6PPF|1|A|U|2373
6PPF|1|A|G|2374
6PPF|1|A|A|2375
6PPF|1|A|C|2376
*
6PPF|1|A|G|2399
6PPF|1|A|G|2400
6PPF|1|A|G|2401
*
6PPF|1|A|C|2410
6PPF|1|A|G|2411
6PPF|1|A|G|2412

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L27