3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGUUC*GGUUAG*CU*ACCCGUAC
Length
21 nucleotides
Bulged bases
6Q95|1|1|U|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6Q95_003 not in the Motif Atlas
Homologous match to J4_9DFE_004
Geometric discrepancy: 0.0946
The information below is about J4_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6Q95|1|1|G|1310
6Q95|1|1|G|1311
6Q95|1|1|U|1312
6Q95|1|1|U|1313
6Q95|1|1|C|1314
*
6Q95|1|1|G|1338
6Q95|1|1|G|1339
6Q95|1|1|U|1340
6Q95|1|1|U|1341
6Q95|1|1|A|1342
6Q95|1|1|G|1343
*
6Q95|1|1|C|1404
6Q95|1|1|U|1405
*
6Q95|1|1|A|1597
6Q95|1|1|C|1598
6Q95|1|1|C|1599
6Q95|1|1|C|1600
6Q95|1|1|G|1601
6Q95|1|1|U|1602
6Q95|1|1|A|1603
6Q95|1|1|C|1604

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain T
50S ribosomal protein L23
Chain Y
50S ribosomal protein L29
Chain d
50S ribosomal protein L34

Coloring options:


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