J4_6Q95_003
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*ACCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6Q95|1|1|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q95_003 not in the Motif Atlas
- Homologous match to J4_9DFE_004
- Geometric discrepancy: 0.0946
- The information below is about J4_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Q95|1|1|G|1310
6Q95|1|1|G|1311
6Q95|1|1|U|1312
6Q95|1|1|U|1313
6Q95|1|1|C|1314
*
6Q95|1|1|G|1338
6Q95|1|1|G|1339
6Q95|1|1|U|1340
6Q95|1|1|U|1341
6Q95|1|1|A|1342
6Q95|1|1|G|1343
*
6Q95|1|1|C|1404
6Q95|1|1|U|1405
*
6Q95|1|1|A|1597
6Q95|1|1|C|1598
6Q95|1|1|C|1599
6Q95|1|1|C|1600
6Q95|1|1|G|1601
6Q95|1|1|U|1602
6Q95|1|1|A|1603
6Q95|1|1|C|1604
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain T
- 50S ribosomal protein L23
- Chain Y
- 50S ribosomal protein L29
- Chain d
- 50S ribosomal protein L34
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