J4_6Q95_010
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6Q95|1|2|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q95_010 not in the Motif Atlas
- Homologous match to J4_6CZR_027
- Geometric discrepancy: 0.1072
- The information below is about J4_6CZR_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.2
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Q95|1|2|G|115
6Q95|1|2|A|116
6Q95|1|2|G|117
6Q95|1|2|U|118
6Q95|1|2|A|119
6Q95|1|2|A|120
6Q95|1|2|C|121
6Q95|1|2|G|122
*
6Q95|1|2|U|239
6Q95|1|2|C|240
*
6Q95|1|2|G|286
6Q95|1|2|U|287
6Q95|1|2|A|288
6Q95|1|2|G|289
*
6Q95|1|2|C|311
6Q95|1|2|C|312
Current chains
- Chain 2
- 16S RIBOSOMAL RNA
Nearby chains
- Chain q
- 30S ribosomal protein S12
- Chain u
- 30S ribosomal protein S16
- Chain v
- 30S ribosomal protein S17
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