3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
6Q95|1|2|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6Q95_010 not in the Motif Atlas
Homologous match to J4_6CZR_027
Geometric discrepancy: 0.1072
The information below is about J4_6CZR_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.2
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6Q95|1|2|G|115
6Q95|1|2|A|116
6Q95|1|2|G|117
6Q95|1|2|U|118
6Q95|1|2|A|119
6Q95|1|2|A|120
6Q95|1|2|C|121
6Q95|1|2|G|122
*
6Q95|1|2|U|239
6Q95|1|2|C|240
*
6Q95|1|2|G|286
6Q95|1|2|U|287
6Q95|1|2|A|288
6Q95|1|2|G|289
*
6Q95|1|2|C|311
6Q95|1|2|C|312

Current chains

Chain 2
16S RIBOSOMAL RNA

Nearby chains

Chain q
30S ribosomal protein S12
Chain u
30S ribosomal protein S16
Chain v
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1115 s