J4_6Q98_009

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6Q98|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Q98_009 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2437

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6Q98|1|2|G|115
6Q98|1|2|A|116
6Q98|1|2|G|117
6Q98|1|2|U|118
6Q98|1|2|A|119
6Q98|1|2|A|120
6Q98|1|2|U|121
6Q98|1|2|G|122
*
6Q98|1|2|U|239
6Q98|1|2|G|240
*
6Q98|1|2|C|286
6Q98|1|2|U|287
6Q98|1|2|A|288
6Q98|1|2|G|289
*
6Q98|1|2|C|311
6Q98|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17