J4_6Q9A_010
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6Q9A|1|1|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q9A_010 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.1511
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Q9A|1|1|C|2285
6Q9A|1|1|G|2286
6Q9A|1|1|A|2287
6Q9A|1|1|A|2288
6Q9A|1|1|G|2289
*
6Q9A|1|1|U|2343
6Q9A|1|1|U|2344
6Q9A|1|1|G|2345
6Q9A|1|1|A|2346
6Q9A|1|1|C|2347
*
6Q9A|1|1|G|2370
6Q9A|1|1|G|2371
6Q9A|1|1|U|2372
*
6Q9A|1|1|A|2381
6Q9A|1|1|G|2382
6Q9A|1|1|G|2383
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
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