J4_6QDW_001

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6QDW|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QDW_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1581

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6QDW|1|b|C|268
6QDW|1|b|C|269
*
6QDW|1|b|G|370
6QDW|1|b|A|371
6QDW|1|b|G|372
6QDW|1|b|U|373
6QDW|1|b|A|374
6QDW|1|b|G|375
*
6QDW|1|b|U|399
6QDW|1|b|G|400
6QDW|1|b|A|401
6QDW|1|b|A|402
6QDW|1|b|U|403
6QDW|1|b|A|404
6QDW|1|b|U|405
6QDW|1|b|G|406
*
6QDW|1|b|C|421
6QDW|1|b|A|422
6QDW|1|b|A|423
6QDW|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9