3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
6QDW|1|b|G|1273, 6QDW|1|b|A|1274, 6QDW|1|b|U|1275, 6QDW|1|b|U|1649
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6QDW_004 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.088
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

6QDW|1|b|C|1272
6QDW|1|b|G|1273
6QDW|1|b|A|1274
6QDW|1|b|U|1275
6QDW|1|b|A|1276
6QDW|1|b|A|1277
6QDW|1|b|A|1278
*
6QDW|1|b|U|1296
6QDW|1|b|C|1297
*
6QDW|1|b|G|1647
6QDW|1|b|C|1648
6QDW|1|b|U|1649
6QDW|1|b|U|1650
*
6QDW|1|b|A|2013
6QDW|1|b|G|2014

Current chains

Chain b
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L32
Chain n
50S ribosomal protein L17
Chain s
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1128 s